dimfilter(1) GMT dimfilter(1)

## NAME

dimfilter - Directional filtering of 2-D gridded files in the space (or time) domain

## SYNOPSIS

dimfilterinput_file.nc-Ddistance_flag-Fxwidth[mode]-Goutput_file.nc-Nxsectors[-Qcols] [-Iincrement] [-Rregion] [-T] [-V[level] ] [-fflags ]Note:No space is allowed between the option flag and the associated arguments.

## DESCRIPTION

dimfilterwill filter a.ncfile in the space (or time) domain by dividing the given filter circle inton_sectors, applying one of the selected primary convolution or non-convolution filters to each sector, and choosing the final outcome according to the selected secondary fil- ter. It computes distances using Cartesian or Spherical geometries. The output.ncfile can optionally be generated as a subregion of the input and/or with a new-Increment. In this way, one may haveaextra spaceain the input data so that there will be no edge effects for the output grid. If the filter is low-pass, then the output may be less frequently sampled than the input.-Qis for the error analysis mode and only requires the total number of columns in the input file, which contains the filtered depths. Finally, one should know thatdimfilterwill not produce a smooth output as other spatial filters do because it returns a minimum median out ofNmedians ofNsectors. The output can be rough unless the input data is noise-free. Thus, an additional fil- tering (e.g., Gaussian via grdfilter) of the DiM-filtered data is gen- erally recommended.

## REQUIRED ARGUMENTS

input_file.ncThe data grid to be filtered.-Ddistance_flagDistanceflagtells how grid (x,y) relates to filterwidth, as follows:flag= 0: grid (x,y) same units aswidth, Cartesian distances.flag= 1: grid (x,y) in degrees,widthin kilometers, Cartesian distances.flag= 2: grid (x,y) in degrees,widthin km, dx scaled by cos(middle y), Cartesian distances. The above options are fastest because they allow weight matrix to be computed only once. The next three options are slower because they recompute weights for each latitude.flag= 3: grid (x,y) in degrees,widthin km, dx scaled by cosine(y), Cartesian distance calculation.flag= 4: grid (x,y) in degrees,widthin km, Spherical distance calculation.-Fxwidth[mode] Sets the primary filter type. Choose among convolution and non-convolution filters. Append the filter codexfollowed by the full diameterwidth. Available convolution filters are: (b) Boxcar: All weights are equal. (c) Cosine Arch: Weights follow a cosine arch curve. (g) Gaussian: Weights are given by the Gaussian function. Non-convolution filters are: (m) Median: Returns median value. (p) Maximum likelihood probability (a mode estimator): Return modal value. If more than one mode is found we return their average value. Append - or + to the filter width if you rather want to return the smallest or largest of the modal values.-NxsectorsSets the secondary filter typexand the number of bow-tie sec- tors.sectorsmust be integer and larger than 0. Whensectorsis set to 1, the secondary filter is not effective. Available secondary filters are: (l) Lower: Return the minimum of all filtered values. (u) Upper: Return the maximum of all filtered values. (a) Average: Return the mean of all filtered values. (m) Median: Return the median of all filtered values. (p) Mode: Return the mode of all filtered values.-Goutput_file.ncoutput_file.ncis the output of the filter.

## OPTIONAL ARGUMENTS

-Ix_inc[and optionallyy_inc] is the output Increment. Appendmto indicate minutes, orcto indicate seconds. If the newx_inc,y_incare NOT integer multiples of the old ones (in the input data), filtering will be considerably slower. [Default: Same as input.]-Rwest,east,south, andnorthdefines the Region of the output points. [Default: Same as input.]-TToggle the node registration for the output grid so as to become the opposite of the input grid [Default gives the same registra- tion as the input grid].-Qcolscolsis the total number of columns in the input text table file. For this mode, it expects to read depths consisted of several columns. Each column represents a filtered grid with a filter width, which can be obtained bygrd2xyz-Z. The outcome will be median, MAD, and mean. So, the column with the medians is used to generate the regional component and the column with the MADs is used to conduct the error analysis.-V[level] (morea|) Select verbosity level [c].-f[i|o]colinfo(morea|) Specify data types of input and/or output columns.-^or just-Print a short message about the syntax of the command, then exits (NOTE: on Windows just use-).-+or just+Print an extensive usage (help) message, including the explana- tion of any module-specific option (but not the GMT common options), then exits.-?or no arguments Print a complete usage (help) message, including the explanation of all options, then exits.

## GRID FILE FORMATS

By default GMT writes out grid as single precision floats in a COARDS-complaint netCDF file format. However, GMT is able to produce grid files in many other commonly used grid file formats and also facilitates so calledapackingaof grids, writing out floating point data as 1- or 2-byte integers. (morea|)

## GEOGRAPHICAL AND TIME COORDINATES

When the output grid type is netCDF, the coordinates will be labeledalongitudea,alatitudea, oratimeabased on the attributes of the input data or grid (if any) or on the-for-Roptions. For example, both-f0x-f1tand-R90w/90e/0t/3t will result in a longitude/time grid. When the x, y, or z coordinate is time, it will be stored in the grid as relative time since epoch as specified by TIME_UNIT and TIME_EPOCH in the gmt.conf file or on the command line. In addition, theunitattribute of the time variable will indicate both this unit and epoch.

## EXAMPLES

Suppose that north_pacific_dbdb5.nc is a file of 5 minute bathymetry from 140E to 260E and 0N to 50N, and you want to find the medians of values within a 300km radius (600km full width) of the output points, which you choose to be from 150E to 250E and 10N to 40N, and you want the output values every 0.5 degree. To prevent the medians from being biased by the sloping plane, you want to divide the filter circle into 6 sectors and to choose the lowest value among 6 medians. Using spheri- cal distance calculations, you need: gmt dimfilter north_pacific_dbdb5.nc -Gfiltered_pacific.nc -Fm600 -D4 \ -Nl6 -R150/250/10/40 -I0.5 -V Suppose that cape_verde.nc is a file of 0.5 minute bathymetry from 32W to 15W and 8N to 25N, and you want to remove small-length-scale fea- tures in order to define a swell in an area extending from 27.5W to 20.5W and 12.5N to 19.5N, and you want the output value every 2 minute. Using cartesian distance calculations, you need: gmt dimfilter cape_verde.nc -Gt.nc -Fm220 -Nl8 -D2 -R-27.5/-20.5/12.5/19.5 -I2m -V gmt grdfilter t.nc -Gcape_swell.nc -Fg50 -D2 -V Suppose that you found a range of filter widths for a given area, and you filtered the given bathymetric data using the range of filter widths (e.g.,f100.ncf110.ncf120.ncf130.nc), and you want to define a regional trend using the range of filter widths, and you want to obtain median absolute deviation (MAD) estimates at each data point. Then, you will need to do: gmt grd2xyz f100.nc -Z > f100.d gmt grd2xyz f110.nc -Z > f110.d gmt grd2xyz f120.nc -Z > f120.d gmt grd2xyz f130.nc -Z > f130.d paste f100.d f110.d f120.d f130.d > depths.d gmt dimfilter depths.d -Q4 > output.z

## LIMITATIONS

When working with geographic (lat, lon) grids, all three convolution filters (boxcar, cosine arch, and gaussian) will properly normalize the filter weights for the variation in gridbox size with latitude, and correctly determine which nodes are needed for the convolution when the filteracircleacrosses a periodic (0-360) boundary or contains a geo- graphic pole. However, the spatial filters, such as median and mode filters, do not use weights and thus should only be used on Cartesian grids (or at very low latitudes) only. If you want to apply such spa- tial filters you should project your data to an equal-area projection and rundimfilteron the resulting Cartesian grid.

## SCRIPT TEMPLATE

The dim.template.sh is a skeleton shell script that can be used to set up a complete DiM analysis, including the MAD analysis.

## REFERENCE

Kim, S.-S., and Wessel, P. (2008), Directional Median Filtering for Regional-Residual Separation of Bathymetry,Geochem.Geophys.Geosyst.,9, Q03005, doi:10.1029/2007GC001850.

## SEE ALSO

gmt(1),grdfilter(1)

## COPYRIGHT

2017, P. Wessel, W. H. F. Smith, R. Scharroo, J. Luis, and F. Wobbe 5.4.2 Jun 24, 2017 dimfilter(1)

gmt5 5.4.2 - Generated Wed Jun 28 15:17:35 CDT 2017